fhttpd
FTP/HTTP server with modules support. Modules run as separate "looping" processes locally or remotely, and can be configured to run under separate userids.
http://www.fhttpd.org

Ecology in GCSE Separate Biology
Site has been designed by four year 11 students. The aim is to provide a revision resource, covering parts of the GCSE Separate Biology Higher Level Syllabus in England.
http://www.danielmwilson.uklinux.net/ecology/

MAC
FTP download, no separate documentation.
http://www.lirmm.fr/ftp/pub/CSP/

everytime
every time (should always be separate words)
http://chefsearch.dmoz.aol.com/cgi-bin/restaurant_search.cgi?search=everytime

A Separate Arrangement
Supplies bouquets to supermarkets nationwide.
http://www.aseparrangement.com

AGN International Ltd.
Worldwide association of separate and independent accounting and consulting firms.
http://www.agn.org/

Only The Best Freebies
Offering separate freebie update newsletters for Canada, USA, and International.
http://www.geocities.com/only_the_best_freebies/

discrete*
sometimes should be discreet* (prudent, unobtrusive), but correct when meaning separate, distinct
http://chefsearch.dmoz.aol.com/cgi-bin/restaurant_search.cgi?search=discrete*

Twingine
A twin search engine! Compare search results from two search engines side by side.
http://twingine.com/

IndieVolume
Allows Windows applications to have totally separate volume, balance and mute settings.
http://www.indievolume.com